Yes, we have added the command line option "/latetaggant", so the protected application will be ready to accept a taggant certificate at a later time. Example:
Themida.exe /latetaggant /protect "MyProjectFile.tmd"
Notice that the protected application with "/latetaggant" cannot be executed until the taggant is applied.
To add the taggant certificate at a later time, you have to use the command line option "/embedtaggant", passing the file to apply the taggant. Example:
Themida.exe /embedtaggant MyProtectedFile.exe
For the time being, the "latetaggant" option is only available for command line protection, you cannot do it from the User Interface.